Feil Family Brain & Mind Research Institute

Publications

Found 10 results
Author Title Type [ Year(Asc)]
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2025
Pinskaya M, Jarroux J, Cipolla R, Morillon A.  2025.  Nascent and Mature RNA Profiling by Subcellular Fractionation in Human Cells.. Methods Mol Biol. 2863:283-296.
2024
Meleshko D, Prjbelski AD, Raiko M, Tomescu AI, Tilgner H, Hajirasouliha I.  2024.  cloudrnaSPAdes: isoform assembly using bulk barcoded RNA sequencing data.. Bioinformatics. 40(2)
Knepp B, Navi BB, Rodriguez F, DeAngelis LM, Elkind MSV, Iadecola C, Sherman CP, Tagawa ST, Saxena A, Ocean AJ et al..  2024.  Ischemic Stroke with Comorbid Cancer Has Specific miRNA-mRNA Networks in Blood That Vary by Ischemic Stroke Mechanism.. Ann Neurol. 96(3):565-581.
Pardo-Palacios FJ, Wang D, Reese F, Diekhans M, Carbonell-Sala S, Williams B, Loveland JE, De María M, Adams MS, Balderrama-Gutierrez G et al..  2024.  Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.. Nat Methods. 21(7):1349-1363.
Gong B, Li D, Łabaj PP, Pan B, Novoradovskaya N, Thierry-Mieg D, Thierry-Mieg J, Chen G, Lucas ABergstrom, LoCoco JS et al..  2024.  Targeted DNA-seq and RNA-seq of Reference Samples with Short-read and Long-read Sequencing.. Sci Data. 11(1):892.
Qu W, Lam M, McInvale JJ, Mares JA, Kwon S, Humala N, Mahajan A, Nguyen T, Jakubiak KA, Mun J-Y et al..  2024.  Xenografted human iPSC-derived neurons with the familial Alzheimer's disease APPV717I mutation reveal dysregulated transcriptome signatures linked to synaptic function and implicate LINGO2 as a disease signaling mediator.. Acta Neuropathol. 147(1):107.
2023
Li J, Jaiswal MK, Chien J-F, Kozlenkov A, Jung J, Zhou P, Gardashli M, Pregent LJ, Engelberg-Cook E, Dickson DW et al..  2023.  Divergent single cell transcriptome and epigenome alterations in ALS and FTD patients with C9orf72 mutation.. Nat Commun. 14(1):5714.
Foord C, Hsu J, Jarroux J, Hu W, Belchikov N, Pollard S, He Y, Joglekar A, Tilgner HU.  2023.  The variables on RNA molecules: concert or cacophony? Answers in long-read sequencing. Nat Methods. 20(1):20-24.
2018
Tilgner H, Jahanbani F, Gupta I, Collier P, Wei E, Rasmussen M, Snyder M.  2018.  Microfluidic isoform sequencing shows widespread splicing coordination in the human transcriptome.. Genome Res. 28(2):231-242.
2015
Dulin JN, Antunes-Martins A, Chandran V, Costigan M, Lerch JK, Willis DE, Tuszynski MH.  2015.  Transcriptomic Approaches to Neural Repair.. J Neurosci. 35(41):13860-7.