Feil Family Brain & Mind Research Institute

Publications

Found 11 results
Author Title Type [ Year(Desc)]
Filters: Keyword is Sequence Analysis, RNA  [Clear All Filters]
2016
Li S, Garrett-Bakelman FE, Chung SS, Sanders MA, Hricik T, Rapaport F, Patel J, Dillon R, Vijay P, Brown AL et al..  2016.  Distinct evolution and dynamics of epigenetic and genetic heterogeneity in acute myeloid leukemia.. Nat Med. 22(7):792-9.
Rosenfeld JA, Reeves D, Brugler MR, Narechania A, Simon S, Durrett R, Foox J, Shianna K, Schatz MC, Gandara J et al..  2016.  Genome assembly and geospatial phylogenomics of the bed bug Cimex lectularius.. Nat Commun. 7:10164.
Yao Y, Norris EH, Mason CE, Strickland S.  2016.  Laminin regulates PDGFRβ(+) cell stemness and muscle development.. Nat Commun. 7:11415.
2017
Elsaid MFawzi, Chalhoub N, Ben-Omran T, Kumar P, Kamel H, Ibrahim K, Mohamoud Y, Al-Dous E, Al-Azwani I, Malek JA et al..  2017.  Mutation in noncoding RNA RNU12 causes early onset cerebellar ataxia.. Ann Neurol. 81(1):68-78.
Jain D, Meydan C, Lange J, Bouuaert CClaeys, Lailler N, Mason CE, Anderson KV, Keeney S.  2017.  rahu is a mutant allele of Dnmt3c, encoding a DNA methyltransferase homolog required for meiosis and transposon repression in the mouse male germline.. PLoS Genet. 13(8):e1006964.
2018
Tilgner H, Jahanbani F, Gupta I, Collier P, Wei E, Rasmussen M, Snyder M.  2018.  Microfluidic isoform sequencing shows widespread splicing coordination in the human transcriptome.. Genome Res. 28(2):231-242.
2023
Luo W, Qu W, Gan L.  2023.  The AD odyssey 2023: Tales of single cell.. Cell. 186(20):4257-4259.
Foord C, Hsu J, Jarroux J, Hu W, Belchikov N, Pollard S, He Y, Joglekar A, Tilgner HU.  2023.  The variables on RNA molecules: concert or cacophony? Answers in long-read sequencing. Nat Methods. 20(1):20-24.
2024
Meleshko D, Prjbelski AD, Raiko M, Tomescu AI, Tilgner H, Hajirasouliha I.  2024.  cloudrnaSPAdes: isoform assembly using bulk barcoded RNA sequencing data.. Bioinformatics. 40(2)
Pardo-Palacios FJ, Wang D, Reese F, Diekhans M, Carbonell-Sala S, Williams B, Loveland JE, De María M, Adams MS, Balderrama-Gutierrez G et al..  2024.  Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.. Nat Methods. 21(7):1349-1363.
Gong B, Li D, Łabaj PP, Pan B, Novoradovskaya N, Thierry-Mieg D, Thierry-Mieg J, Chen G, Lucas ABergstrom, LoCoco JS et al..  2024.  Targeted DNA-seq and RNA-seq of Reference Samples with Short-read and Long-read Sequencing.. Sci Data. 11(1):892.